Publication
17. Pal, N. (2022) Single-Molecule FRET: A Tool to Characterize DNA Nanostructures. Frontiers in Molecular Biosciences. https://doi.org/10.3389/fmolb.2022.835617
16. Jiang, S., Pal, N., Hong, F., Fahmi, N. E., Hu, H., Vrbanac, M., Yan, H., Walter, N. G. and Liu, Y. (2021) Regulating DNA Self-Assembly Dynamics with Controlled Nucleation. ACS Nano. https://doi.org/10.1021/acsnano.1c00027
15. Pal, N., Ray, S. and Walter, N. G. (2021) Single bacterial resolvases first exploit, then constrain intrinsic dynamics of the Holliday junction to direct recombination. Nucleic Acids Research. https://doi.org/10.1093/nar/gkab096
14. Valero, J., Pal, N., Dhakal, S., Walter, N. G. and Famulok M. (2018) A Bio-hybrid DNA Rotor/Stator Nanoengine That Moves Along Predefined Tracks. Nature Nanotechnology, 13, 496. https://www.nature.com/articles/s41565-018-0109-z
13. Pratyusha, V. A., Victoria, G. S., Khan, M. F., Haokip, D. T., Yadav, B., Pal, N., Sethi, S. C., Jain, P., Singh, S. L., Sen, S. and Komath, S. S. (2018) Ras Hyperactivation Versus Overexpression: Lessons from Ras Dynamics in Candida Albicans. Scientific Reports, 8, 5248. https://www.nature.com/articles/s41598-018-23187-8
12. Shweta, H., Pal, N., Singh, M. K., Verma, S. D. and Sen, S. (2017) Dynamics of Water and Ions Near DNA: Perspective from Time-Resolved Fluorescence Stokes Shift Experiments and Molecular Dynamics Simulation. Reviews in Fluorescence 2017, 231-279. https://doi.org/10.1007/978-3-030-01569-5_10
11. Shweta, H., Singh, M. K., Yadav, K., Verma, S. D., Pal, N. and Sen, S. (2017) Effects of T.T-Mismatch on DNA Dynamics Probed by Minor Groove Binders: Comparison of Dynamic Stokes Shifts of Hoechst and DAPI. J. Phys. Chem. B, 121, 10735. http://pubs.acs.org/doi/abs/10.1021/acs.jpcb.7b06937
10. Wu, M., Yadav, R., Pal, N., and Lu, H. P. (2017) Manipulating Motions of Targeted Single Cells in Solution by An Integrated Double-Ring Magnetic Tweezers Imaging Microscope. Rev. Sci. Instrum., 88, 073703. http://aip.scitation.org/doi/pdf/10.1063/1.4995362
9. Pal, N., Wu, M. and Lu, H. P. (2016) Probing Conformational Dynamics of Enzymatic Active Site by An In Situ Single Fluorogenic Probe under picoNewton Force Manipulation. Proc. Natl. Acad. Sci., 113, 15006. http://www.pnas.org/content/113/52/15006.abstract
8. Rajapaksha, S. P., Pal, N., Zheng, D. and Lu, H. P. (2015) Protein-fluctuation-induced water-pore formation in ion channel voltage-sensor translocation across a lipid bilayer membrane. Phys. Rev. E, 92, 052719. https://journals.aps.org/pre/abstract/10.1103/PhysRevE.92.052719
7. Verma, S. D., Pal, N., Singh M. K. and Sen, S. (2015) Sequence-Dependent Solvation Dynamics of Minor-Groove Bound Ligand Inside Duplex-DNA. J. Phys. Chem. B, 119, 11019. http://pubs.acs.org/doi/abs/10.1021/acs.jpcb.5b01977
6. Pal, N., Shweta, H., Singh, M. K., Verma, S. D. and Sen, S. (2015) Power-Law Solvation Dynamics in G-Quadruplex DNA: Role of Hydration Dynamics on Ligand Solvation Inside DNA. J. Phys. Chem. Lett., 6, 1754. http://pubs.acs.org/doi/abs/10.1021/acs.jpclett.5b00653
5. Sharma, S., Pal, N., Chowdhury, P. K, Sen, S. and Ganguli, A. K. (2012) Understanding Growth Kinetics of Nanorods in Microemulsion: A Combined Fluorescence Correlation Spectroscopy, Dynamic Light Scattering, and Electron Microscopy Study J. Am. Chem. Soc., 134, 19677. http://pubs.acs.org/doi/abs/10.1021/ja306556e
4. Verma, S. D., Pal, N., Singh M. K. and Sen S (2012) Probe Position-Dependent Counterion Dynamics in DNA: Comparison of Time-Resolved Stokes Shift of Groove-Bound to Base-Stacked Probes in the Presence of Different Monovalent Counterions. J. Phys. Chem. Lett., 3, 2621. http://pubs.acs.org/doi/abs/10.1021/jz300934x
3. Verma, S. D., Pal, N., Singh M. K., Shweta H and Sen S (2012) Understanding Ligand Interaction with Different Structures of G-Quadruplex DNA: Evidence of Kinetically Controlled Ligand Binding and Binding-Mode Assisted Quadruplex Structure Alteration Anal. Chem., 84, 7218. http://pubs.acs.org/doi/abs/10.1021/ac3015998
2. Pal, N., Verma, S. D., Singh M. K. and Sen S (2011) Fluorescence Correlation Spectroscopy: An Efficient Tool for Measuring Size, Size-Distribution and Polydispersity of Microemulsion Droplets in Solution Anal. Chem., 83, 7736
http://pubs.acs.org/doi/abs/10.1021/ac2012637
1. Pal, N., Verma, S. D. and Sen S (2010) Probe Position Dependence of DNA Dynamics: Comparison of the Time-Resolved Stokes Shift of Groove-Bound to Base- Stacked Probes. J. Am. Chem. Soc., 132, 9277 (Communication). http://pubs.acs.org/doi/abs/10.1021/ja103387t
16. Jiang, S., Pal, N., Hong, F., Fahmi, N. E., Hu, H., Vrbanac, M., Yan, H., Walter, N. G. and Liu, Y. (2021) Regulating DNA Self-Assembly Dynamics with Controlled Nucleation. ACS Nano. https://doi.org/10.1021/acsnano.1c00027
15. Pal, N., Ray, S. and Walter, N. G. (2021) Single bacterial resolvases first exploit, then constrain intrinsic dynamics of the Holliday junction to direct recombination. Nucleic Acids Research. https://doi.org/10.1093/nar/gkab096
14. Valero, J., Pal, N., Dhakal, S., Walter, N. G. and Famulok M. (2018) A Bio-hybrid DNA Rotor/Stator Nanoengine That Moves Along Predefined Tracks. Nature Nanotechnology, 13, 496. https://www.nature.com/articles/s41565-018-0109-z
13. Pratyusha, V. A., Victoria, G. S., Khan, M. F., Haokip, D. T., Yadav, B., Pal, N., Sethi, S. C., Jain, P., Singh, S. L., Sen, S. and Komath, S. S. (2018) Ras Hyperactivation Versus Overexpression: Lessons from Ras Dynamics in Candida Albicans. Scientific Reports, 8, 5248. https://www.nature.com/articles/s41598-018-23187-8
12. Shweta, H., Pal, N., Singh, M. K., Verma, S. D. and Sen, S. (2017) Dynamics of Water and Ions Near DNA: Perspective from Time-Resolved Fluorescence Stokes Shift Experiments and Molecular Dynamics Simulation. Reviews in Fluorescence 2017, 231-279. https://doi.org/10.1007/978-3-030-01569-5_10
11. Shweta, H., Singh, M. K., Yadav, K., Verma, S. D., Pal, N. and Sen, S. (2017) Effects of T.T-Mismatch on DNA Dynamics Probed by Minor Groove Binders: Comparison of Dynamic Stokes Shifts of Hoechst and DAPI. J. Phys. Chem. B, 121, 10735. http://pubs.acs.org/doi/abs/10.1021/acs.jpcb.7b06937
10. Wu, M., Yadav, R., Pal, N., and Lu, H. P. (2017) Manipulating Motions of Targeted Single Cells in Solution by An Integrated Double-Ring Magnetic Tweezers Imaging Microscope. Rev. Sci. Instrum., 88, 073703. http://aip.scitation.org/doi/pdf/10.1063/1.4995362
9. Pal, N., Wu, M. and Lu, H. P. (2016) Probing Conformational Dynamics of Enzymatic Active Site by An In Situ Single Fluorogenic Probe under picoNewton Force Manipulation. Proc. Natl. Acad. Sci., 113, 15006. http://www.pnas.org/content/113/52/15006.abstract
8. Rajapaksha, S. P., Pal, N., Zheng, D. and Lu, H. P. (2015) Protein-fluctuation-induced water-pore formation in ion channel voltage-sensor translocation across a lipid bilayer membrane. Phys. Rev. E, 92, 052719. https://journals.aps.org/pre/abstract/10.1103/PhysRevE.92.052719
7. Verma, S. D., Pal, N., Singh M. K. and Sen, S. (2015) Sequence-Dependent Solvation Dynamics of Minor-Groove Bound Ligand Inside Duplex-DNA. J. Phys. Chem. B, 119, 11019. http://pubs.acs.org/doi/abs/10.1021/acs.jpcb.5b01977
6. Pal, N., Shweta, H., Singh, M. K., Verma, S. D. and Sen, S. (2015) Power-Law Solvation Dynamics in G-Quadruplex DNA: Role of Hydration Dynamics on Ligand Solvation Inside DNA. J. Phys. Chem. Lett., 6, 1754. http://pubs.acs.org/doi/abs/10.1021/acs.jpclett.5b00653
5. Sharma, S., Pal, N., Chowdhury, P. K, Sen, S. and Ganguli, A. K. (2012) Understanding Growth Kinetics of Nanorods in Microemulsion: A Combined Fluorescence Correlation Spectroscopy, Dynamic Light Scattering, and Electron Microscopy Study J. Am. Chem. Soc., 134, 19677. http://pubs.acs.org/doi/abs/10.1021/ja306556e
4. Verma, S. D., Pal, N., Singh M. K. and Sen S (2012) Probe Position-Dependent Counterion Dynamics in DNA: Comparison of Time-Resolved Stokes Shift of Groove-Bound to Base-Stacked Probes in the Presence of Different Monovalent Counterions. J. Phys. Chem. Lett., 3, 2621. http://pubs.acs.org/doi/abs/10.1021/jz300934x
3. Verma, S. D., Pal, N., Singh M. K., Shweta H and Sen S (2012) Understanding Ligand Interaction with Different Structures of G-Quadruplex DNA: Evidence of Kinetically Controlled Ligand Binding and Binding-Mode Assisted Quadruplex Structure Alteration Anal. Chem., 84, 7218. http://pubs.acs.org/doi/abs/10.1021/ac3015998
2. Pal, N., Verma, S. D., Singh M. K. and Sen S (2011) Fluorescence Correlation Spectroscopy: An Efficient Tool for Measuring Size, Size-Distribution and Polydispersity of Microemulsion Droplets in Solution Anal. Chem., 83, 7736
http://pubs.acs.org/doi/abs/10.1021/ac2012637
1. Pal, N., Verma, S. D. and Sen S (2010) Probe Position Dependence of DNA Dynamics: Comparison of the Time-Resolved Stokes Shift of Groove-Bound to Base- Stacked Probes. J. Am. Chem. Soc., 132, 9277 (Communication). http://pubs.acs.org/doi/abs/10.1021/ja103387t